HL_7NWH_023

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

7NWH|1|5|G|1595, 7NWH|1|5|U|1596, 7NWH|1|5|A|1600, 7NWH|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_023 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.2094

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7NWH|1|5|A|1593
7NWH|1|5|C|1594
7NWH|1|5|G|1595
7NWH|1|5|U|1596
7NWH|1|5|G|1597
7NWH|1|5|C|1598
7NWH|1|5|G|1599
7NWH|1|5|A|1600
7NWH|1|5|A|1601
7NWH|1|5|U|1602

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

Ribosomal protein L37