HL_7NWH_066

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7NWH|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_066 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1799

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7NWH|1|5|A|4474
7NWH|1|5|G|4475
7NWH|1|5|C|4476
7NWH|1|5|A|4477
7NWH|1|5|G|4478
7NWH|1|5|A|4479
7NWH|1|5|A|4480
7NWH|1|5|U|4481

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain H

L9

Chain ii

Eukaryotic peptide chain release factor subunit 1

Chain m

60S RIBOSOMAL PROTEIN EL40