HL_7NWH_105

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7NWH|1|9|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_105 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.3084

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|G|1245
7NWH|1|9|A|1246
7NWH|1|9|C|1247
7NWH|1|9|U|1248
7NWH|1|9|C|1249
7NWH|1|9|A|1250
7NWH|1|9|A|1251
7NWH|1|9|C|1252
7NWH|1|9|A|1253
7NWH|1|9|C|1254

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain QQ

Ribosomal protein S16

Chain UU

40S ribosomal protein S20

Chain hh

mRNA