HL_7NWH_108

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7NWH|1|9|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_108 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1905

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7NWH|1|9|G|1366
7NWH|1|9|U|1367
7NWH|1|9|U|1368
7NWH|1|9|A|1369
7NWH|1|9|A|1370
7NWH|1|9|U|1371
7NWH|1|9|U|1372
7NWH|1|9|C|1373

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain RR

40S ribosomal protein S17