HL_7NWH_119

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGAACAGC

Length

9 nucleotides

Bulged bases

7NWH|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_119 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2586

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NWH|1|5|G|2809
7NWH|1|5|U|2810
7NWH|1|5|G|2811
7NWH|1|5|A|2812
7NWH|1|5|A|2813
7NWH|1|5|C|2814
7NWH|1|5|A|2815
7NWH|1|5|G|2816
7NWH|1|5|C|2817

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19