HL_7NWI_025

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7NWI|1|5|A|1630, 7NWI|1|5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_025 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.141

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NWI|1|5|G|1627
7NWI|1|5|C|1628
7NWI|1|5|G|1629
7NWI|1|5|A|1630
7NWI|1|5|A|1631
7NWI|1|5|A|1632
7NWI|1|5|G|1633
7NWI|1|5|A|1634
7NWI|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain A

L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37