HL_7NWI_108

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7NWI|1|9|U|1300, 7NWI|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_108 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2576

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7NWI|1|9|A|1295
7NWI|1|9|U|1296
7NWI|1|9|U|1297
7NWI|1|9|G|1298
7NWI|1|9|A|1299
7NWI|1|9|U|1300
7NWI|1|9|A|1301
7NWI|1|9|G|1302
7NWI|1|9|C|1303
7NWI|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

40S ribosomal protein uS19

Chain dd

ribosomal protein uS14

Chain ff

S27a