HL_7O5B_039

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACCGAUAU

Length

8 nucleotides

Bulged bases

7O5B|1|X|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_039 not in the Motif Atlas

Geometric match to HL_4P5J_004

Geometric discrepancy: 0.2784

The information below is about HL_4P5J_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08550.2

Basepair signature

cWW-F-F-F-cSH

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|A|67
7O5B|1|X|C|68
7O5B|1|X|C|69
7O5B|1|X|G|70
7O5B|1|X|A|71
7O5B|1|X|U|72
7O5B|1|X|A|73
7O5B|1|X|U|74

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 2

50S ribosomal protein L34

Chain s

50S ribosomal protein L23

Chain w

50S ribosomal protein L29