HL_7O5B_051

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

7O5B|1|X|G|433, 7O5B|1|X|A|436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O5B_051 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1194

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|A|429
7O5B|1|X|C|430
7O5B|1|X|A|431
7O5B|1|X|C|432
7O5B|1|X|G|433
7O5B|1|X|U|434
7O5B|1|X|G|435
7O5B|1|X|A|436
7O5B|1|X|A|437
7O5B|1|X|A|438
7O5B|1|X|U|439

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain v

50S ribosomal protein L28