HL_7O7Y_017
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_017 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.3993
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7O7Y|1|A2|U|886
7O7Y|1|A2|A|887
7O7Y|1|A2|U|888
7O7Y|1|A2|U|889
7O7Y|1|A2|U|890
7O7Y|1|A2|U|891
7O7Y|1|A2|G|892
7O7Y|1|A2|U|893
7O7Y|1|A2|U|894
7O7Y|1|A2|G|895
7O7Y|1|A2|G|896
7O7Y|1|A2|U|897
7O7Y|1|A2|U|898
7O7Y|1|A2|U|899
7O7Y|1|A2|U|900
7O7Y|1|A2|C|901
7O7Y|1|A2|G|902
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Af
- 40S ribosomal protein S6
- Chain Ak
- 40S ribosomal protein S11
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