HL_7O7Y_045
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 7O7Y|1|B5|G|294, 7O7Y|1|B5|A|295, 7O7Y|1|B5|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_045 not in the Motif Atlas
- Homologous match to HL_5TBW_008
- Geometric discrepancy: 0.0997
- The information below is about HL_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7O7Y|1|B5|C|289
7O7Y|1|B5|U|290
7O7Y|1|B5|U|291
7O7Y|1|B5|G|292
7O7Y|1|B5|G|293
7O7Y|1|B5|G|294
7O7Y|1|B5|A|295
7O7Y|1|B5|A|296
7O7Y|1|B5|U|297
7O7Y|1|B5|G|298
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- Ribosomal protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bo
- eL42
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