HL_7O7Y_095
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 7O7Y|1|B5|A|3960, 7O7Y|1|B5|C|3967
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_095 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1106
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
7O7Y|1|B5|U|3956
7O7Y|1|B5|C|3957
7O7Y|1|B5|A|3958
7O7Y|1|B5|A|3959
7O7Y|1|B5|A|3960
7O7Y|1|B5|C|3961
7O7Y|1|B5|G|3962
7O7Y|1|B5|G|3963
7O7Y|1|B5|U|3964
7O7Y|1|B5|A|3965
7O7Y|1|B5|6MZ|3966
7O7Y|1|B5|C|3967
7O7Y|1|B5|G|3968
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- eL21
- Chain Bb
- 60S ribosomal protein L29
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