HL_7O7Z_025

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7O7Z|1|A2|U|1301, 7O7Z|1|A2|G|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_025 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.246

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7O7Z|1|A2|A|1296
7O7Z|1|A2|U|1297
7O7Z|1|A2|U|1298
7O7Z|1|A2|G|1299
7O7Z|1|A2|A|1300
7O7Z|1|A2|U|1301
7O7Z|1|A2|A|1302
7O7Z|1|A2|G|1303
7O7Z|1|A2|C|1304
7O7Z|1|A2|U|1305

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain Ao

40S ribosomal protein uS19