HL_7O7Z_027

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

7O7Z|1|A2|U|1372

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_027 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.3155

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7O7Z|1|A2|G|1367
7O7Z|1|A2|PSU|1368
7O7Z|1|A2|U|1369
7O7Z|1|A2|A|1370
7O7Z|1|A2|A|1371
7O7Z|1|A2|U|1372
7O7Z|1|A2|U|1373
7O7Z|1|A2|C|1374

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aq

40S ribosomal protein eS17