HL_7O7Z_061
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 7O7Z|1|B5|U|1551, 7O7Z|1|B5|A|1555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_061 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.0674
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
7O7Z|1|B5|A|1548
7O7Z|1|B5|C|1549
7O7Z|1|B5|G|1550
7O7Z|1|B5|U|1551
7O7Z|1|B5|G|1552
7O7Z|1|B5|C|1553
7O7Z|1|B5|A|1554
7O7Z|1|B5|A|1555
7O7Z|1|B5|A|1556
7O7Z|1|B5|U|1557
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain Bj
- Ribosomal protein L37
Coloring options: