HL_7O7Z_062

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|A|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_062 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1242

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|G|1582
7O7Z|1|B5|C|1583
7O7Z|1|B5|G|1584
7O7Z|1|B5|A|1585
7O7Z|1|B5|A|1586
7O7Z|1|B5|A|1587
7O7Z|1|B5|G|1588
7O7Z|1|B5|A|1589
7O7Z|1|B5|C|1590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37