HL_7O7Z_069

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_069 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1726

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7O7Z|1|B5|U|1945
7O7Z|1|B5|G|1946
7O7Z|1|B5|U|1947
7O7Z|1|B5|A|1948
7O7Z|1|B5|A|1949
7O7Z|1|B5|C|1950
7O7Z|1|B5|A|1951
7O7Z|1|B5|A|1952

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

Ribosomal protein L12