HL_7O7Z_093

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|U|3534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_093 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0772

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7O7Z|1|B5|U|3528
7O7Z|1|B5|C|3529
7O7Z|1|B5|U|3530
7O7Z|1|B5|A|3531
7O7Z|1|B5|A|3532
7O7Z|1|B5|U|3533
7O7Z|1|B5|U|3534
7O7Z|1|B5|A|3535
7O7Z|1|B5|G|3536

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Ribosomal protein L23