HL_7O7Z_097

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

7O7Z|1|B5|A|3960, 7O7Z|1|B5|C|3967

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_097 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1126

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7O7Z|1|B5|U|3956
7O7Z|1|B5|C|3957
7O7Z|1|B5|A|3958
7O7Z|1|B5|A|3959
7O7Z|1|B5|A|3960
7O7Z|1|B5|C|3961
7O7Z|1|B5|G|3962
7O7Z|1|B5|G|3963
7O7Z|1|B5|U|3964
7O7Z|1|B5|A|3965
7O7Z|1|B5|6MZ|3966
7O7Z|1|B5|C|3967
7O7Z|1|B5|G|3968

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain BT

eL21

Chain Bb

60S ribosomal protein L29