HL_7O7Z_120
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGGUGAAAU(PSU)
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_120 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.2265
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
7O7Z|1|A2|A|958
7O7Z|1|A2|G|959
7O7Z|1|A2|G|960
7O7Z|1|A2|U|961
7O7Z|1|A2|G|962
7O7Z|1|A2|A|963
7O7Z|1|A2|A|964
7O7Z|1|A2|A|965
7O7Z|1|A2|U|966
7O7Z|1|A2|PSU|967
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain AI
- E-site tRNA
- Chain Aa
- 40S ribosomal protein S3a
- Chain Ae
- Ribosomal protein S5
- Chain An
- 40S ribosomal protein uS11
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