HL_7O80_003

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

7O80|1|A2|A|158, 7O80|1|A2|U|160, 7O80|1|A2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1691

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O80|1|A2|G|156
7O80|1|A2|U|157
7O80|1|A2|A|158
7O80|1|A2|A2M|159
7O80|1|A2|U|160
7O80|1|A2|U|161
7O80|1|A2|C|162

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain Bz

ATP binding cassette subfamily E member 1