HL_7O80_004

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_004 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2196

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7O80|1|A2|U|197
7O80|1|A2|U|198
7O80|1|A2|C|199
7O80|1|A2|G|200
7O80|1|A2|C|201
7O80|1|A2|G|202

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8