HL_7O80_014

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_014 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0856

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O80|1|A2|C|619
7O80|1|A2|A|620
7O80|1|A2|G|621
7O80|1|A2|C|622
7O80|1|A2|C|623
7O80|1|A2|G|624

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AH

Coronavirus frameshifting stimulation element

Chain Aw

40S ribosomal protein S23