HL_7O80_030

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_030 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2925

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O80|1|A2|C|1566
7O80|1|A2|G|1567
7O80|1|A2|G|1568
7O80|1|A2|C|1569
7O80|1|A2|A|1570
7O80|1|A2|G|1571

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ar

40S ribosomal protein S18

Chain As

Ribosomal protein eS19