HL_7O80_051

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

7O80|1|B5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_051 not in the Motif Atlas

Geometric match to HL_4FEN_001

Geometric discrepancy: 0.3968

The information below is about HL_4FEN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7O80|1|B5|C|862
7O80|1|B5|G|863
7O80|1|B5|A|864
7O80|1|B5|G|865
7O80|1|B5|A|866
7O80|1|B5|C|867
7O80|1|B5|C|868
7O80|1|B5|U|869
7O80|1|B5|G|870

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30