HL_7O80_055

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

7O80|1|B5|C|1269

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_055 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1618

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7O80|1|B5|C|1259
7O80|1|B5|OMG|1260
7O80|1|B5|U|1261
7O80|1|B5|C|1262
7O80|1|B5|U|1263
7O80|1|B5|U|1264
7O80|1|B5|G|1265
7O80|1|B5|1MA|1266
7O80|1|B5|A|1267
7O80|1|B5|A|1268
7O80|1|B5|C|1269
7O80|1|B5|A2M|1270
7O80|1|B5|C|1271
7O80|1|B5|G|1272

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Ba

60S ribosomal protein L27a

Chain Be

eL32