HL_7O80_068
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 7O80|1|B5|A|1923
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_068 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.2405
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7O80|1|B5|C|1917
7O80|1|B5|A|1918
7O80|1|B5|U|1919
7O80|1|B5|G|1920
7O80|1|B5|G|1921
7O80|1|B5|A|1922
7O80|1|B5|A|1923
7O80|1|B5|G|1924
7O80|1|B5|U|1925
7O80|1|B5|C|1926
7O80|1|B5|G|1927
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Bt
- Ribosomal protein L12
- Chain By
- Eukaryotic peptide chain release factor subunit 1
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