HL_7O80_086

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

7O80|1|B5|U|2717

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_086 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.0866

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7O80|1|B5|C|2715
7O80|1|B5|U|2716
7O80|1|B5|U|2717
7O80|1|B5|C|2718
7O80|1|B5|OMG|2719
7O80|1|B5|G|2720

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60s ribosomal protein l41

Chain Bp

eL43