HL_7O80_097

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

7O80|1|B5|A|3960, 7O80|1|B5|C|3967

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_097 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.104

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

7O80|1|B5|U|3956
7O80|1|B5|C|3957
7O80|1|B5|A|3958
7O80|1|B5|A|3959
7O80|1|B5|A|3960
7O80|1|B5|C|3961
7O80|1|B5|G|3962
7O80|1|B5|G|3963
7O80|1|B5|U|3964
7O80|1|B5|A|3965
7O80|1|B5|6MZ|3966
7O80|1|B5|C|3967
7O80|1|B5|G|3968

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain BT

eL21

Chain Bb

60S ribosomal protein L29