HL_7O80_116
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7O80|1|B8|C|81, 7O80|1|B8|A|84, 7O80|1|B8|U|86
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_116 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5829
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7O80|1|B8|G|68
7O80|1|B8|PSU|69
7O80|1|B8|G|70
7O80|1|B8|A|71
7O80|1|B8|A|72
7O80|1|B8|U|73
7O80|1|B8|U|74
7O80|1|B8|OMG|75
7O80|1|B8|C|76
7O80|1|B8|A|77
7O80|1|B8|G|78
7O80|1|B8|G|79
7O80|1|B8|A|80
7O80|1|B8|C|81
7O80|1|B8|A|82
7O80|1|B8|C|83
7O80|1|B8|A|84
7O80|1|B8|U|85
7O80|1|B8|U|86
7O80|1|B8|G|87
7O80|1|B8|A|88
7O80|1|B8|U|89
7O80|1|B8|C|90
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BY
- Ribosomal protein L26
- Chain Bh
- uL29
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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