3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
ACGUGCAAAU
Length
10 nucleotides
Bulged bases
7O81|1|B5|U|1551, 7O81|1|B5|A|1555
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_064 not in the Motif Atlas
Homologous match to HL_8C3A_020
Geometric discrepancy: 0.0872
The information below is about HL_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.8
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

7O81|1|B5|A|1548
7O81|1|B5|C|1549
7O81|1|B5|G|1550
7O81|1|B5|U|1551
7O81|1|B5|G|1552
7O81|1|B5|C|1553
7O81|1|B5|A|1554
7O81|1|B5|A|1555
7O81|1|B5|A|1556
7O81|1|B5|U|1557

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BB
Ribosomal protein L3
Chain BK
Replicase polyprotein 1ab
Chain BP
uL22
Chain Bj
Ribosomal protein L37

Coloring options:


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