HL_7O81_068

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

7O81|1|B5|G|1760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_068 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.5893

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7O81|1|B5|C|1755
7O81|1|B5|U|1756
7O81|1|B5|G|1757
7O81|1|B5|G|1758
7O81|1|B5|C|1759
7O81|1|B5|G|1760
7O81|1|B5|U|1761
7O81|1|B5|G|1762

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BT

eL21

Chain Bb

60S ribosomal protein L29