HL_7O81_087
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 7O81|1|B5|C|2637, 7O81|1|B5|G|2639, 7O81|1|B5|A|2641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_087 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.1081
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7O81|1|B5|C|2635
7O81|1|B5|G|2636
7O81|1|B5|C|2637
7O81|1|B5|A|2638
7O81|1|B5|G|2639
7O81|1|B5|C|2640
7O81|1|B5|A|2641
7O81|1|B5|G|2642
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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