HL_7O81_115

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

7O81|1|B5|C|4764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_115 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.2992

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7O81|1|B5|C|4760
7O81|1|B5|U|4761
7O81|1|B5|C|4762
7O81|1|B5|C|4763
7O81|1|B5|C|4764
7O81|1|B5|U|4765
7O81|1|B5|C|4766
7O81|1|B5|G|4767

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain BU

Ribosomal protein eL22