HL_7O81_128

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGAAACGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_128 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3713

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7O81|1|B5|G|1700
7O81|1|B5|C|1701
7O81|1|B5|C|1702
7O81|1|B5|G|1703
7O81|1|B5|A|1704
7O81|1|B5|A|1705
7O81|1|B5|A|1706
7O81|1|B5|C|1707
7O81|1|B5|G|1708
7O81|1|B5|A|1709
7O81|1|B5|U|1710

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ao

40S ribosomal protein uS19