HL_7O81_133

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_133 not in the Motif Atlas

Homologous match to HL_8CRE_209

Geometric discrepancy: 0.5809

The information below is about HL_8CRE_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99324.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7O81|1|A2|U|886
7O81|1|A2|A|887
7O81|1|A2|U|888
7O81|1|A2|U|889
7O81|1|A2|U|890
7O81|1|A2|U|891
7O81|1|A2|G|892
7O81|1|A2|U|893
7O81|1|A2|U|894
7O81|1|A2|G|895
7O81|1|A2|G|896
7O81|1|A2|U|897
7O81|1|A2|U|898
7O81|1|A2|U|899
7O81|1|A2|U|900
7O81|1|A2|C|901
7O81|1|A2|G|902

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ak

40S ribosomal protein S11