HL_7OBR_019

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7OBR|1|5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_019 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0821

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7OBR|1|5|U|1317
7OBR|1|5|C|1318
7OBR|1|5|U|1319
7OBR|1|5|U|1320
7OBR|1|5|G|1321
7OBR|1|5|A|1322
7OBR|1|5|A|1323
7OBR|1|5|A|1324
7OBR|1|5|C|1325
7OBR|1|5|A|1326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32