HL_7ODE_005

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODE_005 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.2713

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ODE|1|I|U|158
7ODE|1|I|G|159
7ODE|1|I|A|160
7ODE|1|I|A|161
7ODE|1|I|U|162
7ODE|1|I|C|163
7ODE|1|I|C|164
7ODE|1|I|A|165
7ODE|1|I|U|166
7ODE|1|I|A|167
7ODE|1|I|G|168

Current chains

Chain I

23S rRNA

Nearby chains