HL_7ODT_021
3D structure
- PDB id
- 7ODT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C of the human mitoribosomal large subunit assembly intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 7ODT|1|A|A|2500, 7ODT|1|A|C|2501, 7ODT|1|A|C|2502, 7ODT|1|A|A|2506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ODT_021 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.1411
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
7ODT|1|A|U|2497
7ODT|1|A|U|2498
7ODT|1|A|U|2499
7ODT|1|A|A|2500
7ODT|1|A|C|2501
7ODT|1|A|C|2502
7ODT|1|A|A|2503
7ODT|1|A|A|2504
7ODT|1|A|A|2505
7ODT|1|A|A|2506
7ODT|1|A|A|2507
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
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