HL_7OF1_020

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7OF1|1|1|U|879, 7OF1|1|1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF1_020 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.151

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7OF1|1|1|A|876
7OF1|1|1|C|877
7OF1|1|1|G|878
7OF1|1|1|U|879
7OF1|1|1|G|880
7OF1|1|1|C|881
7OF1|1|1|A|882
7OF1|1|1|A|883
7OF1|1|1|A|884
7OF1|1|1|U|885

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A