HL_7OH3_020

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7OH3|1|1|U|879, 7OH3|1|1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OH3_020 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1903

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7OH3|1|1|A|876
7OH3|1|1|C|877
7OH3|1|1|G|878
7OH3|1|1|U|879
7OH3|1|1|G|880
7OH3|1|1|C|881
7OH3|1|1|A|882
7OH3|1|1|A|883
7OH3|1|1|A|884
7OH3|1|1|U|885

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A