HL_7OHS_008

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

7OHS|1|1|G|283, 7OHS|1|1|A|284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHS_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.5656

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OHS|1|1|U|278
7OHS|1|1|U|279
7OHS|1|1|U|280
7OHS|1|1|G|281
7OHS|1|1|G|282
7OHS|1|1|G|283
7OHS|1|1|A|284
7OHS|1|1|A|285
7OHS|1|1|U|286
7OHS|1|1|G|287

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain N

60S ribosomal protein L15-A