HL_7OHS_023

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7OHS|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHS_023 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3765

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OHS|1|1|C|1239
7OHS|1|1|A|1240
7OHS|1|1|U|1241
7OHS|1|1|G|1242
7OHS|1|1|G|1243
7OHS|1|1|A|1244
7OHS|1|1|A|1245
7OHS|1|1|G|1246
7OHS|1|1|U|1247
7OHS|1|1|C|1248
7OHS|1|1|G|1249

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1