HL_7OHT_003

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7OHT|1|1|G|218, 7OHT|1|1|A|219, 7OHT|1|1|G|220

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHT_003 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1788

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7OHT|1|1|G|216
7OHT|1|1|U|217
7OHT|1|1|G|218
7OHT|1|1|A|219
7OHT|1|1|G|220
7OHT|1|1|A|221
7OHT|1|1|A|222
7OHT|1|1|U|223
7OHT|1|1|C|224

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A