HL_7OHT_014

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7OHT|1|1|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHT_014 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3924

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OHT|1|1|C|1239
7OHT|1|1|A|1240
7OHT|1|1|U|1241
7OHT|1|1|G|1242
7OHT|1|1|G|1243
7OHT|1|1|A|1244
7OHT|1|1|A|1245
7OHT|1|1|G|1246
7OHT|1|1|U|1247
7OHT|1|1|C|1248
7OHT|1|1|G|1249

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2

Chain x

Ribosome assembly protein 4