HL_7OHT_017

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAGG

Length

5 nucleotides

Bulged bases

7OHT|1|1|A|1406

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHT_017 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2936

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OHT|1|1|C|1402
7OHT|1|1|A|1406
7OHT|1|1|A|1407
7OHT|1|1|G|1408
7OHT|1|1|G|1409

Current chains

Chain 1

25S rRNA

Nearby chains

Chain e

60S ribosomal protein L32