HL_7OHU_006

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

7OHU|1|1|U|210, 7OHU|1|1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0879

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OHU|1|1|C|208
7OHU|1|1|A|209
7OHU|1|1|U|210
7OHU|1|1|A|211
7OHU|1|1|G|212

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A