3D structure

PDB id
7OHU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
7OHU|1|1|G|218, 7OHU|1|1|A|219, 7OHU|1|1|G|220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OHU_007 not in the Motif Atlas
Homologous match to HL_8C3A_007
Geometric discrepancy: 0.1621
The information below is about HL_8C3A_007
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.12
Basepair signature
cWW-cWW-F-tWH
Number of instances in this motif group
16

Unit IDs

7OHU|1|1|G|216
7OHU|1|1|U|217
7OHU|1|1|G|218
7OHU|1|1|A|219
7OHU|1|1|G|220
7OHU|1|1|A|221
7OHU|1|1|A|222
7OHU|1|1|U|223
7OHU|1|1|C|224

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4-A
Chain Y
60S ribosomal protein L26-A

Coloring options:


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