HL_7OHU_008

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

7OHU|1|1|A|285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.3871

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OHU|1|1|U|278
7OHU|1|1|U|279
7OHU|1|1|U|280
7OHU|1|1|G|281
7OHU|1|1|G|282
7OHU|1|1|G|283
7OHU|1|1|A|284
7OHU|1|1|A|285
7OHU|1|1|U|286
7OHU|1|1|G|287

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A