HL_7OHU_020

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCAGG

Length

7 nucleotides

Bulged bases

7OHU|1|1|C|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_020 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.4222

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OHU|1|1|C|958
7OHU|1|1|C|959
7OHU|1|1|U|960
7OHU|1|1|C|961
7OHU|1|1|A|962
7OHU|1|1|G|963
7OHU|1|1|G|964

Current chains

Chain 1

25S rRNA

Nearby chains